In this work the formalism of metabolic P systems is employed as a basis of a new computational framework for modeling biological networks. The proposed software is a virtual laboratory, called MetaPlab, which supports the synthesis of metabolic P systems by means of an extensible plugin-based architecture. The Java implementation of the software is outlined and a specific plugin at work is described to highlight the internal functioning of the whole architecture.
MetaPlab: A Computational Framework for Metabolic P Systems
CASTELLINI, ALBERTO;MANCA, Vincenzo
2009-01-01
Abstract
In this work the formalism of metabolic P systems is employed as a basis of a new computational framework for modeling biological networks. The proposed software is a virtual laboratory, called MetaPlab, which supports the synthesis of metabolic P systems by means of an extensible plugin-based architecture. The Java implementation of the software is outlined and a specific plugin at work is described to highlight the internal functioning of the whole architecture.
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